C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 3 (class II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262305 RAB11FIP3-001 ENSG00000090565 9606 + 16:425619-523011 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262305
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262305 1.163±0.00 2.193±1.57 2.147±0.00 2.615±0.00 17.235±0.00 2.380±0.00 2.166±1.83 2.430±0.00 2.416±0.33 2.962±0.88 3.100±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031N CIL_00031N_0002 CGP 16:401826-523011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005768 IDA endosome
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0017137 NAS Rab GTPase binding
GO:0030306 IPI ADP-ribosylation factor binding
GO:0030496 IDA midbody
GO:0032154 IDA cleavage furrow
GO:0032456 IDA endocytic recycling
GO:0042803 IDA protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045171 IDA intercellular bridge
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120691 Rab11fip3-001 protein_coding Mus_musculus 0 1759
ENSMUST00000118828 Rab11fip3-002 protein_coding Mus_musculus 0 1465
ENSMUST00000122103 Rab11fip3-004 protein_coding Mus_musculus 0 1134
ENSDART00000010764 rab11fip3-201 protein_coding Danio_rerio 0 375
ENSDART00000136836 rab11fip3-001 protein_coding Danio_rerio 0 375
ENSMUST00000144587 Rab11fip3-003 retained_intron Mus_musculus 0 340
ENSMUST00000148021 Rab11fip3-006 protein_coding Mus_musculus 0 300
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0000005 62
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0000005 62

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