C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 167
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262482 RNF167-001 ENSG00000108523 9606 + 17:4940128-4945222 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262482 10.823±0.00 15.958±0.00 0.928±0.00 16.019±0.00 16.460±0.00 26.399±0.00 10.598±8.88 18.710±0.00 12.543±0.00 11.457±0.00 32.599±0.00 25.294±23.72 26.327±0.00 26.498±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WE CIL_0004WE_0001 CGP 17:4932297-4940251
CIL_00009G CIL_00009G_0001 CGP 17:4937130-4945222
CIL_0000C6 CIL_0000C6_0001 CGP 17:4940008-4949061

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0045786 IMP negative regulation of cell cycle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037534 Rnf167-001 protein_coding Mus_musculus 0 1554
ENSMUST00000141695 Rnf167-007 nonsense_mediated_decay Mus_musculus 0 941
ENSMUST00000152276 Rnf167-002 retained_intron Mus_musculus 0 813
ENSMUST00000152160 Rnf167-003 nonsense_mediated_decay Mus_musculus 0 752
ENSMUST00000151034 Rnf167-005 retained_intron Mus_musculus 0 592
ENSMUST00000131071 Rnf167-006 retained_intron Mus_musculus 0 377
ENSMUST00000143313 Rnf167-008 retained_intron Mus_musculus 0 320
ENSMUST00000141537 Rnf167-004 processed_transcript Mus_musculus 0 254
ENSMUST00000152458 Rnf167-009 retained_intron Mus_musculus 0 244
ENSMUST00000141237 Rnf167-010 retained_intron Mus_musculus 0 204

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