C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262839 TRPC5-001 ENSG00000072315 9606 - X:111774315-112082776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000262839
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000262839 0.004±0.00 0.004±0.00 1.241±0.72 0.026±0.02 0.007±0.00 0.306±0.30 0.216±0.00 0.113±0.00 0.089±0.09 0.009±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007A4 CIL_0007A4_0001 CGP X:111774315-112457112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005262 IDA calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006811 IEA ion transport
GO:0006816 TAS calcium ion transport
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0015279 TAS store-operated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034704 IDA calcium channel complex
GO:0055085 TAS:IEA transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040184 Trpc5-001 protein_coding Mus_musculus 0 4041
ENSMUST00000148240 Trpc5-002 retained_intron Mus_musculus 0 2423
ENSMUST00000029311 Trpc4-201 protein_coding Mus_musculus 0 974
ENSDART00000148115 trpc5b-001 protein_coding Danio_rerio 0 708
ENSDART00000141770 trpc5b-002 nonsense_mediated_decay Danio_rerio 0 706
ENSDART00000086115 trpc5b-201 protein_coding Danio_rerio 0 704

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