C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM domain and HD domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262878 SAMHD1-001 ENSG00000101347 9606 - 20:36890229-36951843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262878 34.771±0.00 26.649±0.00 1.085±0.00 5.326±3.08 16.872±0.18 30.275±25.06 12.168±9.44 13.547±9.92 6.843±1.71 13.521±2.62 3.536±2.46 16.636±4.47 17.129±2.17 16.638±10.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XY CIL_0004XY_0001 CGP 20:36777442-36894235
CIL_0004XX CIL_0004XX_0001 CGP 20:36876121-36951843
CIL_0004ZW CIL_0004ZW_0001 CGP 20:36890229-37095995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IDA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005622 NAS intracellular
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0006203 IDA dGTP catabolic process
GO:0006955 NAS immune response
GO:0008270 IDA zinc ion binding
GO:0008832 IDA dGTPase activity
GO:0032567 IDA dGTP binding
GO:0045087 IEA innate immune response
GO:0045088 IMP regulation of innate immune response
GO:0046061 IDA dATP catabolic process
GO:0051289 IDA protein homotetramerization
GO:0051607 IMP defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088523 Samhd1-201 protein_coding Mus_musculus 0 669
ENSMUST00000057725 Samhd1-001 protein_coding Mus_musculus 0 669
ENSMUST00000109549 Samhd1-002 protein_coding Mus_musculus 0 667
ENSMUST00000139263 Samhd1-005 protein_coding Mus_musculus 0 667
ENSMUST00000123932 Samhd1-003 nonsense_mediated_decay Mus_musculus 0 614
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.0000001 64
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0.0000005 62

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