C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-minded family bHLH transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262901 SIM1-201 ENSG00000112246 9606 - 6:100388872-100463677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyMusclePlacentaTestisENST00000262901
Transcript ID Colon Kidney Muscle Placenta Testis
ENST00000262901 0.003±0.00 0.050±0.00 0.843±0.00 0.013±0.00 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NG CIL_0007NG_0001 UCNEbase 6:99749802-100612540
CIL_0008SA CIL_0008SA_0001 VISTA 6:99910036-100511515
CIL_00097X CIL_00097X_0001 VISTA 6:100156252-100757191
CIL_0008V6 CIL_0008V6_0001 VISTA 6:100225935-100826717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0030154 IEA cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020071 Sim1-201 protein_coding Mus_musculus 0 3072

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