C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (DNA-directed), delta 3, accessory subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263681 POLD3-001 ENSG00000077514 9606 + 11:74592530-74643057 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263681
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263681 3.856±0.00 1.196±0.00 1.220±0.00 1.567±0.15 1.549±0.32 1.221±0.30 1.207±0.00 2.445±0.00 1.313±0.25 2.999±0.63 1.168±1.05 6.255±3.01 3.027±0.61 8.267±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SI CIL_0001SI_0002 CGP 11:74493851-74731385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000722 TAS telomere maintenance via recombination
GO:0000723 TAS telomere maintenance
GO:0000731 NAS DNA synthesis involved in DNA repair
GO:0003887 NAS DNA-directed DNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0006261 IEA DNA-dependent DNA replication
GO:0006271 TAS DNA strand elongation involved in DNA replication
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006284 TAS base-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006297 IMP nucleotide-excision repair, DNA gap filling
GO:0006298 NAS mismatch repair
GO:0032201 TAS telomere maintenance via semi-conservative replication
GO:0043625 NAS delta DNA polymerase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032969 Pold3-001 protein_coding Mus_musculus 0 1620
ENSMUST00000127128 Pold3-002 nonsense_mediated_decay Mus_musculus 0 1284
ENSMUST00000119476 Gm12475-001 processed_pseudogene Mus_musculus 0 1099
ENSMUST00000130413 Pold3-006 retained_intron Mus_musculus 0 492
ENSMUST00000123675 Pold3-005 retained_intron Mus_musculus 0 422
ENSMUST00000156518 Pold3-007 retained_intron Mus_musculus 0 346
ENSMUST00000156202 Pold3-008 processed_transcript Mus_musculus 0 291
ENSMUST00000149104 Pold3-003 processed_transcript Mus_musculus 0 226
ENSMUST00000129556 Pold3-004 retained_intron Mus_musculus 3e-28 132

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