C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264360 PCDH10-001 ENSG00000138650 9606 + 4:133149315-133194700 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264360 0.026±0.00 0.159±0.00 0.284±0.00 6.466±1.77 0.027±0.02 0.138±0.12 0.032±0.02 0.740±0.00 0.268±0.27 0.081±0.01 0.030±0.00 0.227±0.07 1.768±0.39 0.764±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0001 CGP 4:129093317-133208606
CIL_00001S CIL_00001S_0001 CGP 4:133149315-134201748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170695 Pcdh10-202 protein_coding Mus_musculus 0 6133
ENSMUST00000166126 Pcdh10-201 protein_coding Mus_musculus 0 4540
ENSMUST00000171554 Pcdh10-203 protein_coding Mus_musculus 0 4540

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