Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	retinoblastoma binding protein 5
ENST00000264515	RBBP5-001	ENSG00000117222	9606	-	1:205086142-205122015	protein_coding

Expression Patterns

Transcript ID	Adipose	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000264515	3.441±0.00	3.651±0.67	2.827±0.15	2.491±0.77	0.905±0.47	3.172±0.10	2.454±0.59	3.235±1.16	3.299±2.61	2.772±0.90	2.095±0.10	4.323±1.35

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IPI:IEA	protein binding
GO:0005634	IDA	nucleus
GO:0005730	IDA	nucleolus
GO:0006351	IEA	transcription, DNA-templated
GO:0006355	IEA	regulation of transcription, DNA-templated
GO:0006974	IDA	cellular response to DNA damage stimulus
GO:0035064	IDA	methylated histone binding
GO:0035097	IPI	histone methyltransferase complex
GO:0042800	IDA	histone methyltransferase activity (H3-K4 specific)
GO:0043627	IDA	response to estrogen
GO:0044212	IDA	transcription regulatory region DNA binding
GO:0048188	IDA	Set1C/COMPASS complex
GO:0051568	IDA	histone H3-K4 methylation
GO:0071339	IDA	MLL1 complex

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000190997	Rbbp5-002	protein_coding	Mus_musculus	0	2846
ENSMUST00000190825	Rbbp5-001	protein_coding	Mus_musculus	0	2730
ENSMUST00000187505	Rbbp5-005	protein_coding	Mus_musculus	0	2368
ENSMUST00000027700	Rbbp5-003	protein_coding	Mus_musculus	0	1792
ENSMUST00000118511	Gm11977-001	processed_pseudogene	Mus_musculus	0	1304
ENSMUST00000189786	Rbbp5-007	protein_coding	Mus_musculus	0	761
ENSMUST00000187834	Rbbp5-006	retained_intron	Mus_musculus	0	425
ENSMUST00000188575	Rbbp5-004	protein_coding	Mus_musculus	0	361

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