C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, alpha 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264741 ITGA9-001 ENSG00000144668 9606 + 3:37452119-37823514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264741 7.275±0.00 15.682±0.00 0.572±0.00 0.799±0.13 3.416±0.59 2.763±0.41 6.245±2.60 3.037±0.12 3.179±0.10 2.987±0.32 0.632±0.00 2.666±1.19 3.637±0.85 11.773±9.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VQ CIL_0005VQ_0001 CGP 3:37452115-37984469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005518 IEA collagen binding
GO:0005886 TAS plasma membrane
GO:0007155 IGI cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007411 TAS axon guidance
GO:0008305 TAS integrin complex
GO:0009925 IEA basal plasma membrane
GO:0016020 IEA membrane
GO:0030198 TAS extracellular matrix organization
GO:0030593 IEA neutrophil chemotaxis
GO:0034679 IEA integrin alpha9-beta1 complex
GO:0042060 IEA wound healing
GO:0043236 IEA laminin binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044165 Itga9-001 protein_coding Mus_musculus 0 3866
ENSMUST00000124360 Itga9-002 protein_coding Mus_musculus 0 1936
ENSMUST00000149150 Itga9-004 protein_coding Mus_musculus 0 501

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