C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264883 NUP54-001 ENSG00000138750 9606 - 4:76114664-76148515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264883
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264883 1.754±0.00 1.998±0.00 5.164±1.20 1.773±0.47 6.635±0.00 3.237±0.95 2.060±0.69 0.978±0.00 8.713±3.49 7.233±1.00 2.780±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IEA protein binding
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0006605 IEA protein targeting
GO:0006913 IEA nucleocytoplasmic transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038514 Nup54-001 protein_coding Mus_musculus 0 1847
ENSMUST00000161109 Gm15790-001 processed_pseudogene Mus_musculus 0 1423
ENSMUST00000123694 Nup54-007 retained_intron Mus_musculus 0 455

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