C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265012 GCNT2-004 ENSG00000111846 9606 + 6:10585746-10629368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLungMuscleOvaryENST00000265012
Transcript ID Adrenal Brain Colon Heart Lung Muscle Ovary
ENST00000265012 0.171±0.00 0.131±0.07 1.633±0.00 1.761±0.80 0.813±0.00 0.128±0.00 0.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097A CIL_00097A_0001 VISTA 6:10093642-10694839
CIL_00086X CIL_00086X_0001 VISTA 6:10107199-10709812
CIL_000382 CIL_000382_0001 CGP 6:10393186-10629368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0007179 ISS transforming growth factor beta receptor signaling pathway
GO:0008109 IMP N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity
GO:0008284 ISS positive regulation of cell proliferation
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0010718 ISS positive regulation of epithelial to mesenchymal transition
GO:0010812 ISS negative regulation of cell-substrate adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030335 ISS positive regulation of cell migration
GO:0034116 ISS positive regulation of heterotypic cell-cell adhesion
GO:0036438 IMP maintenance of lens transparency
GO:0051897 ISS positive regulation of protein kinase B signaling
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069958 Gcnt2-202 protein_coding Mus_musculus 0 656

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