C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stanniocalcin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265087 STC2-001 ENSG00000113739 9606 - 5:173314713-173329503 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLungMuscleOvaryTestisENST00000265087
Transcript ID Adipose Bladder Brain Colon Heart Lung Muscle Ovary Testis
ENST00000265087 0.367±0.00 0.139±0.00 0.058±0.00 0.062±0.00 0.023±0.00 0.640±0.00 0.118±0.11 0.358±0.15 0.240±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_0002DP CIL_0002DP_0001 CGP 5:173314713-173616660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005615 IDA extracellular space
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006874 IEA cellular calcium ion homeostasis
GO:0006979 IEA response to oxidative stress
GO:0007566 IEA embryo implantation
GO:0010629 IDA negative regulation of gene expression
GO:0019899 IDA enzyme binding
GO:0020037 IDA heme binding
GO:0030968 IEA endoplasmic reticulum unfolded protein response
GO:0033280 IEA response to vitamin D
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0040015 IEA negative regulation of multicellular organism growth
GO:0042803 IDA protein homodimerization activity
GO:0043434 IEA response to peptide hormone
GO:0046697 IEA decidualization
GO:0046885 IDA regulation of hormone biosynthetic process
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055074 IEA calcium ion homeostasis
GO:0071456 IEA cellular response to hypoxia
GO:2001256 IEA regulation of store-operated calcium entry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020546 Stc2-001 protein_coding Mus_musculus 0 1234
ENSMUST00000139991 Stc2-004 processed_transcript Mus_musculus 0 477

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