C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 1, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265304 SSBP1-001 ENSG00000106028 9606 + 7:141738321-141750461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265304
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265304 41.966±0.00 62.331±0.00 20.279±4.83 39.064±16.09 34.599±13.18 25.247±11.51 29.930±14.02 22.867±12.73 15.526±3.21 12.802±7.23 59.328±25.65 52.173±13.39 54.919±22.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A1 CIL_0003A1_0001 CGP 7:141708353-141787922
CIL_0003A0 CIL_0003A0_0001 CGP 7:141738321-141787922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0006260 IEA DNA replication
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0051096 IDA positive regulation of helicase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114779 Ssbp1-001 protein_coding Mus_musculus 0 686
ENSMUST00000121360 Ssbp1-003 protein_coding Mus_musculus 0 676
ENSMUST00000117411 Ssbp1-004 protein_coding Mus_musculus 0 673
ENSMUST00000031971 Ssbp1-002 protein_coding Mus_musculus 0 566
ENSMUST00000117830 Ssbp1-005 protein_coding Mus_musculus 0 363

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