C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi to ER traffic protein 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265857 GET4-001 ENSG00000239857 9606 + 7:876552-896434 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverMuscleOvaryPlacentaTestisENST00000265857
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Muscle Ovary Placenta Testis
ENST00000265857 21.701±0.00 3.209±0.00 17.130±11.53 18.314±0.00 17.895±12.96 16.070±0.00 15.421±0.00 46.558±16.31 34.149±7.35 42.271±7.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018K CIL_00018K_0001 CGP 7:726701-896435
CIL_00018J CIL_00018J_0001 CGP 7:816615-896436
CIL_000186 CIL_000186_0001 CGP 7:876552-955407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IDA cytosol
GO:0006810 IEA transport
GO:0071816 IMP tail-anchored membrane protein insertion into ER membrane
GO:0071818 IDA BAT3 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026976 Get4-001 protein_coding Mus_musculus 0 1219
ENSMUST00000130326 Get4-003 protein_coding Mus_musculus 0 931
ENSMUST00000110878 Get4-002 protein_coding Mus_musculus 0 865
ENSMUST00000138508 Get4-004 protein_coding Mus_musculus 0 592
ENSMUST00000124420 Get4-006 retained_intron Mus_musculus 0 270
ENSMUST00000138059 Get4-005 retained_intron Mus_musculus 0 255

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