C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: naked cuticle homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268459 NKD1-001 ENSG00000140807 9606 + 16:50548330-50640739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268459
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268459 0.373±0.00 1.003±0.00 0.637±0.38 0.410±0.25 1.128±0.00 0.058±0.00 0.629±0.52 0.505±0.32 1.288±0.36 0.062±0.00 1.234±0.30 1.588±0.39 1.810±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PU CIL_0003PU_0001 CGP 16:50313487-50640739
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_00090I CIL_00090I_0001 VISTA 16:50514444-51115745
CIL_00085B CIL_00085B_0001 VISTA 16:50535781-51137187
CIL_00090J CIL_00090J_0001 VISTA 16:50540952-51141798
CIL_0003PT CIL_0003PT_0001 CGP 16:50548330-50681353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 IDA protein phosphatase type 2A complex
GO:0001754 ISS eye photoreceptor cell differentiation
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007525 ISS somatic muscle development
GO:0016055 IEA Wnt signaling pathway
GO:0030165 IEA PDZ domain binding
GO:0030178 IEA negative regulation of Wnt signaling pathway
GO:0045732 IMP positive regulation of protein catabolic process
GO:0090090 ISS negative regulation of canonical Wnt signaling pathway
GO:0090249 ISS regulation of cell motility involved in somitogenic axis elongation
GO:1901231 ISS positive regulation of non-canonical Wnt signaling pathway via JNK cascade
GO:1901233 ISS negative regulation of convergent extension involved in axis elongation
GO:2000096 ISS positive regulation of Wnt signaling pathway, planar cell polarity pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034086 Nkd1-201 protein_coding Mus_musculus 0 1855
ENSMUST00000169179 Nkd1-202 protein_coding Mus_musculus 0 1474

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