C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 11, type 2, OB-cadherin (osteoblast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268603 CDH11-001 ENSG00000140937 9606 - 16:64943753-65122198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000268603
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000268603 2.590±0.00 0.683±0.00 1.035±0.14 3.680±1.77 1.632±0.56 0.167±0.00 2.534±0.00 1.871±1.85 3.380±0.31 6.034±2.21 6.786±6.03 2.795±2.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SB CIL_0006SB_0002 CGP 16:64943753-66404786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001503 NAS ossification
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021957 IEA corticospinal tract morphogenesis
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075190 Cdh11-201 protein_coding Mus_musculus 0 5024
ENSMUST00000155660 Gm6483-003 processed_transcript Mus_musculus 0 1116
ENSMUST00000096485 Gm21811-001 unprocessed_pseudogene Mus_musculus 0 1066
ENSMUST00000139264 2610005L07Rik-002 transcribed_unprocessed_pseudogene Mus_musculus 0 1020
ENSMUST00000153710 Gm6483-002 protein_coding Mus_musculus 0 917
ENSMUST00000140111 2610005L07Rik-001 processed_transcript Mus_musculus 0 896
ENSMUST00000150051 6820431F20Rik-003 transcribed_unprocessed_pseudogene Mus_musculus 0 832
ENSMUST00000178995 Gm21092-202 protein_coding Mus_musculus 0 765
ENSMUST00000127799 Gm6483-001 protein_coding Mus_musculus 0 704
ENSMUST00000133001 Gm6483-004 processed_transcript Mus_musculus 0 693
ENSMUST00000153748 6820431F20Rik-001 processed_transcript Mus_musculus 0 691
ENSMUST00000097690 Gm10557-201 pseudogene Mus_musculus 0 682
ENSMUST00000178451 Gm21092-201 protein_coding Mus_musculus 0 654
ENSMUST00000144307 Gm6483-006 retained_intron Mus_musculus 0 494
ENSMUST00000136929 Gm6483-005 retained_intron Mus_musculus 0 390
ENSDART00000002279 cdh11-201 protein_coding Danio_rerio 0 220
ENSDART00000127332 cdh11-001 protein_coding Danio_rerio 0 220

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