C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AFG3-like AAA ATPase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000269143 AFG3L2-001 ENSG00000141385 9606 - 18:12328944-12377314 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269143 11.530±0.00 11.004±0.00 10.074±0.00 12.161±0.12 13.051±4.82 9.745±5.38 16.023±1.58 19.259±8.62 5.488±1.32 7.665±0.00 29.732±14.63 22.614±7.60 18.997±2.99 13.618±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0001 VISTA 18:11977697-12581651
CIL_00025T CIL_00025T_0002 CGP 18:12254319-12344320
CIL_0005DV CIL_0005DV_0001 CGP 18:12307669-12377314
CIL_0005DU CIL_0005DU_0001 CGP 18:12328944-12432238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006508 IEA proteolysis
GO:0007005 IEA mitochondrion organization
GO:0007409 IEA axonogenesis
GO:0007528 IEA neuromuscular junction development
GO:0008053 IEA mitochondrial fusion
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016265 IEA death
GO:0021675 IEA nerve development
GO:0034982 IEA mitochondrial protein processing
GO:0040014 IEA regulation of multicellular organism growth
GO:0042407 IEA cristae formation
GO:0042552 IEA myelination
GO:0048747 IEA muscle fiber development
GO:0051082 TAS unfolded protein binding
GO:0060013 IEA righting reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025408 Afg3l2-201 protein_coding Mus_musculus 0 2409
ENSDART00000109064 si:ch1073-174d20.2-201 protein_coding Danio_rerio 0 475
ENSDART00000152240 si:ch1073-174d20.2-001 protein_coding Danio_rerio 0 475

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