C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: papillary renal cell carcinoma (translocation-associated)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000271526 PRCC-001 ENSG00000143294 9606 + 1:156767500-156800817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000271526
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000271526 26.534±0.00 34.980±0.00 0.504±0.00 13.593±11.36 13.798±12.52 18.051±0.00 14.934±0.00 13.246±11.36 8.222±6.58 20.832±0.00 12.507±11.28 22.106±17.03 24.950±8.67 22.696±10.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007093 IDA mitotic cell cycle checkpoint
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005015 Prcc-001 protein_coding Mus_musculus 0 2302

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