C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000271915 KCNN3-001 ENSG00000143603 9606 - 1:154697455-154870280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000271915
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000271915 0.223±0.00 1.871±0.64 0.271±0.00 0.665±0.06 0.350±0.01 0.587±0.00 0.705±0.69 1.777±0.82 0.330±0.34 0.012±0.00 0.073±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LU CIL_0000LU_0002 CGP 1:154582062-154870280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005516 IBA:IEA calmodulin binding
GO:0005886 IBA plasma membrane
GO:0006813 IEA potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0015269 IEA calcium-activated potassium channel activity
GO:0016021 IEA integral component of membrane
GO:0016286 IBA:IEA small conductance calcium-activated potassium channel activity
GO:0043025 IBA neuronal cell body
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000811 Kcnn3-001 protein_coding Mus_musculus 0 3568
ENSMUST00000124584 Kcnn3-002 retained_intron Mus_musculus 0 883
ENSDART00000088588 kcnn1b-201 protein_coding Danio_rerio 0 865
ENSDART00000132685 kcnn1b-001 protein_coding Danio_rerio 0 865
ENSDART00000142596 kcnn1b-003 protein_coding Danio_rerio 0 771
ENSDART00000141221 KCNN2-001 protein_coding Danio_rerio 0 736
ENSMUST00000183332 Rbm4b-007 retained_intron Mus_musculus 0.0002 55

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