C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272418 MRPS5-001 ENSG00000144029 9606 - 2:95087207-95122000 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272418 15.474±0.00 19.393±0.00 3.363±0.00 13.634±7.10 21.025±0.00 11.884±9.82 7.862±5.02 14.472±9.79 18.925±15.48 12.254±8.82 17.698±14.50 42.949±34.37 24.882±6.35 41.065±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I3 CIL_0004I3_0002 CGP 2:95025677-95149434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028852 Mrps5-001 protein_coding Mus_musculus 0 1050
ENSMUST00000120816 Gm13328-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000128535 Mrps5-002 retained_intron Mus_musculus 0 610
ENSMUST00000145271 Mrps5-005 retained_intron Mus_musculus 0 512

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