C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2F (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272930 UBE2F-001 ENSG00000184182 9606 + 2:237966955-238042595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272930
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272930 6.557±0.00 5.460±0.00 4.291±0.00 5.421±0.00 2.855±1.83 3.187±0.00 4.504±1.50 3.376±1.07 3.413±1.22 3.259±0.00 5.775±1.16 7.554±0.14 10.867±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity
GO:0019788 IDA NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178627 Ube2f-201 protein_coding Mus_musculus 0 1493
ENSMUST00000171165 Ube2f-002 protein_coding Mus_musculus 0 1491
ENSMUST00000171112 Ube2f-004 protein_coding Mus_musculus 0 1295
ENSMUST00000191368 Ube2f-003 protein_coding Mus_musculus 0 1083
ENSMUST00000059743 Ube2f-001 protein_coding Mus_musculus 0 1033
ENSMUST00000071825 Gm5434-201 protein_coding Mus_musculus 0 1000
ENSMUST00000080066 Gm7099-201 pseudogene Mus_musculus 0 721
ENSMUST00000120831 Gm16016-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000185950 Ube2f-009 retained_intron Mus_musculus 0 414
ENSMUST00000188576 Ube2f-007 retained_intron Mus_musculus 0 401
ENSMUST00000189589 Ube2f-010 retained_intron Mus_musculus 0 289
ENSMUST00000191533 Ube2f-006 protein_coding Mus_musculus 0 219
ENSMUST00000187494 Ube2f-008 retained_intron Mus_musculus 0 217
ENSMUST00000181346 Gm26864-001 processed_pseudogene Mus_musculus 2e-27 128
ENSMUST00000185697 Ube2f-005 retained_intron Mus_musculus 6e-23 113

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