C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIH, polypeptide 2, 44kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274400 GTF2H2-001 ENSG00000145736 9606 - 5:71034957-71067601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverOvaryPlacentaTestisENST00000274400
Transcript ID Adipose Brain Breast Heart Liver Ovary Placenta Testis
ENST00000274400 0.076±0.00 0.094±0.00 0.155±0.00 0.075±0.00 0.121±0.00 0.070±0.02 0.086±0.00 0.196±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZF CIL_0004ZF_0001 CGP 5:70968483-71067689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0002031 IMP G-protein coupled receptor internalization
GO:0003676 TAS nucleic acid binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004672 IDA protein kinase activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS:IEA DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS:IEA nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006412 TAS translation
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008270 IEA zinc ion binding
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0009411 TAS response to UV
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0047485 IPI protein N-terminus binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066984 Gtf2h2-001 protein_coding Mus_musculus 0 1568
ENSMUST00000145266 Gtf2h2-003 nonsense_mediated_decay Mus_musculus 0 1565
ENSMUST00000142182 Gtf2h2-004 retained_intron Mus_musculus 0 1140
ENSMUST00000066940 Gtf2h2-006 protein_coding Mus_musculus 0 671
ENSMUST00000134842 Gtf2h2-002 nonsense_mediated_decay Mus_musculus 0 671
ENSMUST00000124644 Gtf2h2-008 processed_transcript Mus_musculus 0 427
ENSMUST00000152049 Gtf2h2-007 processed_transcript Mus_musculus 0 361
ENSMUST00000147229 Gtf2h2-005 retained_intron Mus_musculus 0 361

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