C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel and clathrin linker 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281142 SCLT1-001 ENSG00000151466 9606 - 4:128883993-129093607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungOvaryPlacentaTestisENST00000281142
Transcript ID Breast Colon Liver Lung Ovary Placenta Testis
ENST00000281142 2.005±0.00 2.188±0.00 2.670±0.00 2.887±0.00 2.578±0.51 2.627±0.00 3.856±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0001 CGP 4:128269237-128875224
CIL_00001M CIL_00001M_0001 CGP 4:128809623-129093607
CIL_0006YI CIL_0006YI_0002 CGP 4:128864921-129116640

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0008022 IEA protein C-terminus binding
GO:0015630 IDA microtubule cytoskeleton
GO:0017080 IEA sodium channel regulator activity
GO:0030276 IEA clathrin binding
GO:0042384 IMP cilium assembly
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0070062 IDA extracellular vesicular exosome
GO:0071439 IEA clathrin complex
GO:0097539 IDA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026866 Sclt1-001 protein_coding Mus_musculus 0 2167
ENSMUST00000146125 Sclt1-004 nonsense_mediated_decay Mus_musculus 0 2074
ENSMUST00000148769 Sclt1-002 nonsense_mediated_decay Mus_musculus 0 2047
ENSMUST00000140373 Sclt1-006 retained_intron Mus_musculus 0 955
ENSMUST00000142908 Sclt1-009 retained_intron Mus_musculus 0 327
ENSMUST00000154773 Sclt1-007 nonsense_mediated_decay Mus_musculus 0 298

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