C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000281828 FARSB-001 ENSG00000116120 9606 - 2:222570536-222656337 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000281828
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000281828 7.159±0.00 8.098±0.00 0.922±0.00 9.446±2.72 7.708±0.00 6.576±0.00 3.900±2.27 5.942±0.00 3.461±1.80 2.691±0.00 8.154±5.33 5.283±1.75 5.328±2.93 10.034±4.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LF CIL_0008LF_0001 VISTA 2:221986023-222587201
CIL_00041I CIL_00041I_0002 CGP 2:222424517-222656337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000287 IEA magnesium ion binding
GO:0003723 IEA RNA binding
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 TAS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006418 TAS tRNA aminoacylation for protein translation
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068333 Farsb-001 protein_coding Mus_musculus 0 2061
ENSMUST00000170217 Farsb-002 protein_coding Mus_musculus 0 2039
ENSMUST00000189529 Farsb-004 nonsense_mediated_decay Mus_musculus 0 1792
ENSMUST00000188247 Farsb-006 protein_coding Mus_musculus 0 989
ENSMUST00000190441 Farsb-003 protein_coding Mus_musculus 0 484
ENSMUST00000189931 Farsb-007 processed_transcript Mus_musculus 0 200

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