C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orthodenticle homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282549 OTX1-001 ENSG00000115507 9606 + 2:63050802-63057836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaENST00000282549
Transcript ID Brain Breast Ovary Placenta
ENST00000282549 0.310±0.15 0.151±0.00 0.144±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000976 CIL_000976_0001 VISTA 2:62666720-63267794
CIL_0000RR CIL_0000RR_0002 CGP 2:62673851-63057836
CIL_00084N CIL_00084N_0001 VISTA 2:62678793-63279521
CIL_00090Q CIL_00090Q_0001 VISTA 2:62740879-63342178
CIL_00095K CIL_00095K_0001 VISTA 2:62748560-63349968
CIL_0007MW CIL_0007MW_0001 UCNEbase 2:62787578-63424747
CIL_000100 CIL_000100_0002 CGP 2:63050057-63827843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0022037 IEA metencephalon development
GO:0030900 IEA forebrain development
GO:0030901 IEA midbrain development
GO:0042472 IEA inner ear morphogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048852 IEA diencephalon morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006071 Otx1-001 protein_coding Mus_musculus 0 2154
ENSMUST00000172395 Otx1-002 retained_intron Mus_musculus 0 1720
ENSMUST00000147486 Otx1-003 protein_coding Mus_musculus 0 739

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