C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jade family PHD finger 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282605 JADE2-003 ENSG00000043143 9606 + 5:134525657-134579474 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungPlacentaTestisENST00000282605
Transcript ID Brain Breast Colon Heart Liver Lung Placenta Testis
ENST00000282605 2.818±0.00 1.107±0.00 1.021±0.00 0.454±0.00 2.887±0.00 2.354±0.00 1.932±0.61 1.922±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0001 UCNEbase 5:134390519-134524544
CIL_00062U CIL_00062U_0002 CGP 5:134402087-134583230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109091 Jade2-004 protein_coding Mus_musculus 0 2957
ENSMUST00000020655 Jade2-001 protein_coding Mus_musculus 0 2957
ENSMUST00000109090 Jade2-002 protein_coding Mus_musculus 0 2119
ENSDART00000075432 JADE2-201 protein_coding Danio_rerio 0 472
ENSDART00000151773 JADE2-001 protein_coding Danio_rerio 0 472
ENSMUST00000151277 Jade2-003 processed_transcript Mus_musculus 0 224

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