C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283131 SMARCA5-001 ENSG00000153147 9606 + 4:143513463-143557486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283131 5.147±0.00 7.253±0.00 1.899±0.00 6.115±1.00 5.673±0.55 6.992±0.00 4.743±0.00 5.614±2.68 4.529±2.17 8.362±1.64 2.753±1.81 10.201±7.21 10.328±8.57 31.880±9.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000183 IEA chromatin silencing at rDNA
GO:0000793 IDA condensed chromosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005677 IEA chromatin silencing complex
GO:0006200 IDA ATP catabolic process
GO:0006302 IEA double-strand break repair
GO:0006333 IEA chromatin assembly or disassembly
GO:0006334 IDA nucleosome assembly
GO:0006338 IDA:IEA chromatin remodeling
GO:0006352 IDA DNA-templated transcription, initiation
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016584 IDA nucleosome positioning
GO:0016589 IDA NURF complex
GO:0016787 IEA hydrolase activity
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 IDA ATPase activity
GO:0031010 IEA ISWI-type complex
GO:0031213 IPI RSF complex
GO:0031491 IEA nucleosome binding
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0042393 IDA histone binding
GO:0043044 IMP:IEA ATP-dependent chromatin remodeling
GO:0043596 IDA nuclear replication fork

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043359 Smarca5-001 protein_coding Mus_musculus 0 5155
ENSMUST00000117628 Gm13135-001 processed_pseudogene Mus_musculus 0 4087
ENSMUST00000121342 Gm13034-001 processed_pseudogene Mus_musculus 0 4056
ENSMUST00000119840 Gm13140-001 processed_pseudogene Mus_musculus 0 4041
ENSMUST00000121843 Smarca5-ps-001 transcribed_processed_pseudogene Mus_musculus 0 4034
ENSMUST00000121031 Gm13136-001 processed_pseudogene Mus_musculus 0 4013
ENSMUST00000119218 Gm13231-001 processed_pseudogene Mus_musculus 0 3777
ENSMUST00000122807 Smarca5-002 processed_transcript Mus_musculus 0 2591
ENSMUST00000171805 Smarca5-ps-002 processed_transcript Mus_musculus 0 1463
ENSMUST00000142470 Smarca5-005 retained_intron Mus_musculus 0 424
ENSMUST00000148455 Smarca5-003 retained_intron Mus_musculus 0 390
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000140110 Smarca5-004 retained_intron Mus_musculus 0 315
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000150277 Smarca5-006 retained_intron Mus_musculus 0 241
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 2e-28 134

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