C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin, beta 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283249 ITGB6-001 ENSG00000115221 9606 - 2:160099666-160200301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLungMuscleOvaryPlacentaENST00000283249
Transcript ID Bladder Heart Kidney Lung Muscle Ovary Placenta
ENST00000283249 1.214±0.00 0.217±0.18 7.481±0.00 1.569±0.54 0.945±0.00 0.137±0.04 3.261±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TX CIL_0005TX_0001 CGP 2:159932006-160271888
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0004872 IEA receptor activity
GO:0005178 IEA integrin binding
GO:0005886 TAS plasma membrane
GO:0006954 IEA inflammatory response
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009615 IEA response to virus
GO:0009897 IEA external side of plasma membrane
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0030198 TAS extracellular matrix organization
GO:0043235 IDA receptor complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059888 Itgb6-002 protein_coding Mus_musculus 0 2846
ENSMUST00000028348 Itgb6-001 protein_coding Mus_musculus 0 2614
ENSMUST00000154764 Itgb6-004 protein_coding Mus_musculus 0 2501
ENSMUST00000112517 Itgb6-003 protein_coding Mus_musculus 0 2501
ENSMUST00000133887 Itgb6-006 processed_transcript Mus_musculus 0 1408
ENSMUST00000151035 Itgb6-007 processed_transcript Mus_musculus 0 937

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