C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | RAB guanine nucleotide exchange factor (GEF) 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000284957  |
RABGEF1-001 |
ENSG00000154710 |
9606 | + |
7:66740733-66811464  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00024I | CIL_00024I_0001 | CGP | 7:66205199-66811187 |
| CIL_0005UP | CIL_0005UP_0001 | CGP | 7:66628881-66811464 |
| CIL_000256 | CIL_000256_0001 | CGP | 7:66682164-66958551 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005769 | IMP | early endosome |
| GO:0006612 | IMP | protein targeting to membrane |
| GO:0006897 | IEA | endocytosis |
| GO:0008270 | IEA | zinc ion binding |
| GO:0017112 | IDA | Rab guanyl-nucleotide exchange factor activity |
| GO:0017137 | IPI | Rab GTPase binding |
| GO:0032851 | IDA | positive regulation of Rab GTPase activity |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000026390
|
Rabgef1-002 | protein_coding | Mus_musculus | 0 | 1895 |
|
ENSMUST00000119797
|
Rabgef1-001 | protein_coding | Mus_musculus | 0 | 1892 |
|
ENSMUST00000148264
|
Rabgef1-003 | protein_coding | Mus_musculus | 0 | 944 |
|
ENSMUST00000119027
|
Rabgef1-004 | protein_coding | Mus_musculus | 0 | 841 |
|
ENSMUST00000147493
|
Rabgef1-007 | retained_intron | Mus_musculus | 0 | 501 |
|
ENSMUST00000143727
|
Rabgef1-005 | retained_intron | Mus_musculus | 0 | 444 |
