C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium large conductance calcium-activated channel, subfamily M, alpha member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000286627 KCNMA1-001 ENSG00000156113 9606 - 10:76884881-77638595 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286627
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286627 1.900±0.00 4.038±1.55 13.497±5.68 0.324±0.00 1.292±0.00 6.802±4.55 2.495±0.00 3.372±0.00 1.558±1.19 0.786±0.38 4.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0005E6 CIL_0005E6_0001 CGP 10:75431453-77638595
CIL_0008QZ CIL_0008QZ_0001 VISTA 10:76330832-76932117
CIL_0008KV CIL_0008KV_0001 VISTA 10:76764029-77364632
CIL_0008L3 CIL_0008L3_0001 VISTA 10:76772404-77373369
CIL_00087A CIL_00087A_0001 VISTA 10:76800721-77402185
CIL_0004CA CIL_0004CA_0001 CGP 10:76869601-77926526

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IDA response to hypoxia
GO:0003779 IDA actin binding
GO:0005216 IEA ion channel activity
GO:0005249 IDA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005901 IDA caveola
GO:0006811 IEA ion transport
GO:0006813 IDA:IEA potassium ion transport
GO:0006970 IDA response to osmotic stress
GO:0007268 TAS synaptic transmission
GO:0007596 TAS blood coagulation
GO:0008076 IDA voltage-gated potassium channel complex
GO:0015269 IDA:IEA calcium-activated potassium channel activity
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0030007 IDA cellular potassium ion homeostasis
GO:0034465 IDA response to carbon monoxide
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042391 IDA regulation of membrane potential
GO:0043065 IMP positive regulation of apoptotic process
GO:0045794 IDA negative regulation of cell volume
GO:0046872 IEA metal ion binding
GO:0051592 IDA response to calcium ion
GO:0055085 IEA transmembrane transport
GO:0060072 IMP large conductance calcium-activated potassium channel activity
GO:0060073 IDA micturition
GO:0060083 IDA smooth muscle contraction involved in micturition
GO:0070062 IDA extracellular vesicular exosome
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000190044 Kcnma1-005 protein_coding Mus_musculus 0 5343
ENSMUST00000190985 Kcnma1-004 nonsense_mediated_decay Mus_musculus 0 4963
ENSMUST00000188210 Kcnma1-001 protein_coding Mus_musculus 0 4660
ENSMUST00000065788 Kcnma1-201 protein_coding Mus_musculus 0 4558
ENSMUST00000163322 Kcnma1-205 protein_coding Mus_musculus 0 4453
ENSMUST00000112423 Kcnma1-204 protein_coding Mus_musculus 0 4324
ENSMUST00000179097 Kcnma1-208 protein_coding Mus_musculus 0 3703
ENSMUST00000177634 Kcnma1-207 protein_coding Mus_musculus 0 3661
ENSMUST00000188285 Kcnma1-003 protein_coding Mus_musculus 0 3280
ENSMUST00000188991 Kcnma1-006 protein_coding Mus_musculus 0 3216
ENSDART00000143200 kcnma1a-001 protein_coding Danio_rerio 0 2824
ENSMUST00000172099 Kcnma1-206 protein_coding Mus_musculus 0 2545
ENSMUST00000100831 Kcnma1-203 protein_coding Mus_musculus 0 2545
ENSMUST00000074983 Kcnma1-202 protein_coding Mus_musculus 0 2543
ENSDART00000122557 kcnma1a-201 protein_coding Danio_rerio 0 2266
ENSMUST00000179836 Kcnma1-209 protein_coding Mus_musculus 0 2010
ENSMUST00000190339 Kcnma1-002 protein_coding Mus_musculus 0 902
ENSDART00000082500 kcnma1b-201 protein_coding Danio_rerio 0 560
ENSDART00000113062 BICD1 (1 of 2)-201 protein_coding Danio_rerio 0.00005 55

Loading