C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287647 FANCD2-001 ENSG00000144554 9606 + 3:10026414-10099660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyOvaryENST00000287647
Transcript ID Adrenal Brain Heart Kidney Ovary
ENST00000287647 0.590±0.00 0.082±0.05 0.055±0.00 0.144±0.00 0.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D5 CIL_0002D5_0001 CGP 3:9962537-10101930
CIL_00059I CIL_00059I_0001 CGP 3:10026414-10108231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000793 IEA condensed chromosome
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005794 IDA Golgi apparatus
GO:0006281 TAS DNA repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007129 IEA synapsis
GO:0007276 IEA gamete generation
GO:0010332 IDA response to gamma radiation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0070182 IPI DNA polymerase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036340 Fancd2-001 protein_coding Mus_musculus 0 3437
ENSMUST00000129462 Fancd2-006 processed_transcript Mus_musculus 0 200

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