C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain, phosphoinositide interacting 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000288828 WIPI2-001 ENSG00000157954 9606 + 7:5190188-5233826 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000288828
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000288828 2.817±0.00 4.078±0.00 2.756±1.92 0.896±0.71 1.798±0.00 3.261±0.00 2.827±0.00 4.437±3.54 8.047±3.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M3 CIL_0002M3_0001 CGP 7:5190188-5306870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IMP autophagic vacuole assembly
GO:0000407 IDA pre-autophagosomal structure
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0005829 IDA cytosol
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0034045 IDA pre-autophagosomal structure membrane
GO:0043234 IDA protein complex
GO:0080025 IDA phosphatidylinositol-3,5-bisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036872 Wipi2-001 protein_coding Mus_musculus 0 1301
ENSMUST00000110778 Wipi2-003 protein_coding Mus_musculus 0 1280
ENSMUST00000153936 Wipi2-002 retained_intron Mus_musculus 0 444
ENSMUST00000143980 Wipi2-004 retained_intron Mus_musculus 0 364

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