C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289431 SPATA2-001 ENSG00000158480 9606 - 20:49903391-49915508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289431 1.896±0.00 2.574±0.00 0.495±0.00 5.028±1.86 1.132±0.84 1.654±0.43 1.240±0.78 1.503±1.38 0.897±0.46 1.306±0.76 2.281±2.03 5.009±1.48 3.069±0.56 10.737±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0001 VISTA 20:49375075-49977641
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_0001VJ CIL_0001VJ_0001 CGP 20:49812713-49915508
CIL_00027D CIL_00027D_0001 CGP 20:49903391-49953892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 NAS spermatogenesis
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057627 Spata2-001 protein_coding Mus_musculus 0 1674
ENSMUST00000109211 Spata2-002 protein_coding Mus_musculus 0 1327

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