C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leprecan-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290510 LEPREL2-002 ENSG00000110811 9606 + 12:6828410-6839851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290510 1.710±0.00 3.561±0.00 0.250±0.00 1.267±0.00 2.426±0.00 2.229±1.70 1.030±0.73 6.871±0.00 1.243±0.00 7.283±0.00 1.118±0.00 9.944±8.24 5.138±1.08 2.708±1.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XS CIL_0003XS_0002 CGP 12:6828410-6847393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005788 TAS endoplasmic reticulum lumen
GO:0008285 IDA negative regulation of cell proliferation
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 IEA peptidyl-proline hydroxylation
GO:0019797 IEA procollagen-proline 3-dioxygenase activity
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023958 Leprel2-001 protein_coding Mus_musculus 0 2320
ENSMUST00000135127 Leprel2-002 nonsense_mediated_decay Mus_musculus 0 1718
ENSMUST00000147296 Leprel2-006 retained_intron Mus_musculus 0 497
ENSMUST00000129225 Leprel2-004 retained_intron Mus_musculus 0 479
ENSMUST00000149870 Leprel2-005 retained_intron Mus_musculus 0 359
ENSMUST00000126987 Leprel2-007 retained_intron Mus_musculus 0 316
ENSMUST00000135546 Leprel2-003 retained_intron Mus_musculus 0.00000002 66
ENSMUST00000085555 Diexf-201 protein_coding Mus_musculus 0.0002 53
ENSMUST00000142184 Atxn7l1-014 protein_coding Mus_musculus 0.0002 53
ENSMUST00000125192 Atxn7l1-001 protein_coding Mus_musculus 0.0002 53
ENSMUST00000146040 Atxn7l1-002 protein_coding Mus_musculus 0.0002 53

Loading