C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000290650 UBR1-001 ENSG00000159459 9606 - 15:42942897-43106101 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290650 2.410±0.00 1.770±0.00 0.771±0.00 2.833±1.01 1.656±0.31 2.259±0.05 2.566±1.43 1.335±0.21 0.988±0.82 1.606±0.72 1.804±1.33 2.758±1.34 1.384±0.02 5.409±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YF CIL_0005YF_0001 CGP 15:42738734-43106113

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000502 IEA proteasome complex
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030163 IEA protein catabolic process
GO:0032007 IMP negative regulation of TOR signaling
GO:0070728 IDA leucine binding
GO:0071233 IDA cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028728 Ubr1-001 protein_coding Mus_musculus 0 6431
ENSMUST00000133408 Ubr1-002 retained_intron Mus_musculus 0 1245
ENSMUST00000153868 Ubr1-007 processed_transcript Mus_musculus 0 774
ENSMUST00000135891 Ubr1-006 processed_transcript Mus_musculus 0 569
ENSMUST00000129790 Ubr1-005 processed_transcript Mus_musculus 0 470
ENSMUST00000154023 Ubr1-004 processed_transcript Mus_musculus 0 411

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