C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: indian hedgehog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295731 IHH-001 ENSG00000163501 9606 - 2:219054420-219060467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000295731
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000295731 0.015±0.00 0.267±0.00 0.096±0.00 0.017±0.00 4.620±2.72 1.371±1.06 0.283±0.00 1.024±0.00 2.353±2.51 0.065±0.04 0.366±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EC CIL_0006EC_0001 CGP 2:219002846-219060467
CIL_0001HY CIL_0001HY_0002 CGP 2:219054420-219160865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IEA ossification
GO:0001569 IEA patterning of blood vessels
GO:0001649 IEA osteoblast differentiation
GO:0001701 IEA in utero embryonic development
GO:0001708 IEA cell fate specification
GO:0001763 IEA morphogenesis of a branching structure
GO:0001944 IEA vasculature development
GO:0001947 ISS heart looping
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003382 IEA epithelial cell morphogenesis
GO:0003406 IEA retinal pigment epithelium development
GO:0005113 IPI patched binding
GO:0005509 IDA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005886 IDA plasma membrane
GO:0006029 IEA proteoglycan metabolic process
GO:0006508 IEA proteolysis
GO:0007154 IEA cell communication
GO:0007224 IDA smoothened signaling pathway
GO:0007267 IEA cell-cell signaling
GO:0007275 IEA multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0008233 IEA peptidase activity
GO:0008284 IEA positive regulation of cell proliferation
GO:0009880 IEA embryonic pattern specification
GO:0009968 IEA negative regulation of signal transduction
GO:0016539 IEA intein-mediated protein splicing
GO:0030154 IEA cell differentiation
GO:0030704 IEA vitelline membrane formation
GO:0031012 IEA extracellular matrix
GO:0031016 IEA pancreas development
GO:0032332 IEA positive regulation of chondrocyte differentiation
GO:0032355 IEA response to estradiol
GO:0032967 IEA positive regulation of collagen biosynthetic process
GO:0033085 ISS negative regulation of T cell differentiation in thymus
GO:0033088 ISS negative regulation of immature T cell proliferation in thymus
GO:0033089 ISS positive regulation of T cell differentiation in thymus
GO:0035264 IEA multicellular organism growth
GO:0035988 IEA chondrocyte proliferation
GO:0040008 IEA regulation of growth
GO:0043010 IEA camera-type eye development
GO:0043066 IEA negative regulation of apoptotic process
GO:0045453 IEA bone resorption
GO:0045595 IEA regulation of cell differentiation
GO:0045596 IEA negative regulation of cell differentiation
GO:0045880 ISS positive regulation of smoothened signaling pathway
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046638 ISS positive regulation of alpha-beta T cell differentiation
GO:0046639 ISS negative regulation of alpha-beta T cell differentiation
GO:0048074 IEA negative regulation of eye pigmentation
GO:0048469 IEA cell maturation
GO:0048557 IEA embryonic digestive tract morphogenesis
GO:0048596 IEA embryonic camera-type eye morphogenesis
GO:0048666 IEA neuron development
GO:0048745 IEA smooth muscle tissue development
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0051216 IEA cartilage development
GO:0060135 IEA maternal process involved in female pregnancy
GO:0060220 IEA camera-type eye photoreceptor cell fate commitment
GO:0060323 IEA head morphogenesis
GO:0061053 ISS somite development
GO:0072498 IEA embryonic skeletal joint development
GO:0090136 IEA epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164097 Ihh-001 protein_coding Mus_musculus 0 1602
ENSMUST00000189364 Ihh-002 retained_intron Mus_musculus 0 774

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