C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyloid beta (A4) precursor protein-binding, family B, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295974 APBB2-002 ENSG00000163697 9606 - 4:40810027-41214618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295974 1.824±0.00 0.733±0.00 2.094±0.00 2.886±0.31 2.884±1.85 2.567±0.88 0.714±0.02 2.885±0.00 2.584±0.00 3.165±0.00 0.463±0.00 3.223±2.83 0.964±0.44 4.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038T CIL_00038T_0001 CGP 4:40749897-41216714
CIL_00038S CIL_00038S_0001 CGP 4:40810027-41268455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 ISS beta-amyloid binding
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0007050 ISS cell cycle arrest
GO:0008134 ISS transcription factor binding
GO:0016020 NAS membrane
GO:0030027 ISS lamellipodium
GO:0030308 ISS negative regulation of cell growth
GO:0030426 ISS growth cone
GO:0035556 NAS intracellular signal transduction
GO:0045202 ISS synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159786 Apbb2-001 protein_coding Mus_musculus 0 3487
ENSMUST00000162349 Apbb2-004 protein_coding Mus_musculus 0 3249
ENSMUST00000087256 Apbb2-201 protein_coding Mus_musculus 0 3227
ENSMUST00000160870 Apbb2-007 protein_coding Mus_musculus 0 1799
ENSMUST00000159512 Apbb2-003 protein_coding Mus_musculus 0 1796
ENSMUST00000162366 Apbb2-008 protein_coding Mus_musculus 0 1775
ENSMUST00000162401 Apbb2-005 retained_intron Mus_musculus 0 1341
ENSMUST00000160185 Apbb2-006 retained_intron Mus_musculus 0 1327
ENSMUST00000160775 Apbb2-018 processed_transcript Mus_musculus 0 1245
ENSMUST00000162955 Apbb2-002 processed_transcript Mus_musculus 0 1242
ENSMUST00000160063 Apbb2-017 protein_coding Mus_musculus 0 992
ENSMUST00000161771 Apbb2-019 processed_transcript Mus_musculus 0 717
ENSMUST00000162382 Apbb2-014 protein_coding Mus_musculus 0 492
ENSMUST00000161879 Apbb2-016 protein_coding Mus_musculus 0 468
ENSMUST00000160103 Apbb2-011 protein_coding Mus_musculus 0 444
ENSMUST00000162994 Apbb2-009 protein_coding Mus_musculus 0 200
ENSMUST00000160054 Apbb2-020 retained_intron Mus_musculus 9.00054e-42 178
ENSMUST00000159357 Apbb2-015 protein_coding Mus_musculus 2e-33 150
ENSMUST00000161716 Apbb2-012 protein_coding Mus_musculus 1e-30 141
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 60

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