C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296440 PLXNB1-001 ENSG00000164050 9606 - 3:48403854-48430051 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastLiverMuscleOvaryPlacentaTestisENST00000296440
Transcript ID Adipose Adrenal Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENST00000296440 0.684±0.00 0.716±0.00 2.051±0.00 1.096±0.00 1.762±0.00 1.853±0.00 0.139±0.06 6.103±1.97 4.132±1.64 2.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002116 IDA semaphorin receptor complex
GO:0004872 TAS:IEA receptor activity
GO:0004888 NAS transmembrane signaling receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005576 IEA extracellular region
GO:0005622 IEA intracellular
GO:0005886 TAS plasma membrane
GO:0005887 NAS integral component of plasma membrane
GO:0007162 IDA negative regulation of cell adhesion
GO:0007165 TAS:IEA signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0008360 IDA regulation of cell shape
GO:0014068 ISS positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 IEA membrane
GO:0016477 NAS cell migration
GO:0017154 TAS semaphorin receptor activity
GO:0030215 TAS semaphorin receptor binding
GO:0032321 ISS positive regulation of Rho GTPase activity
GO:0032794 ISS GTPase activating protein binding
GO:0033689 ISS negative regulation of osteoblast proliferation
GO:0035556 NAS intracellular signal transduction
GO:0043931 ISS ossification involved in bone maturation
GO:0048812 ISS neuron projection morphogenesis
GO:0051493 IDA regulation of cytoskeleton organization
GO:0071526 IDA semaphorin-plexin signaling pathway
GO:1900220 ISS semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072093 Plxnb1-001 protein_coding Mus_musculus 0 3803
ENSMUST00000130366 Plxnb1-003 protein_coding Mus_musculus 0 490
ENSMUST00000131462 Plxnb1-002 protein_coding Mus_musculus 0 490
ENSMUST00000060808 Plxnb2-201 protein_coding Mus_musculus 0 254
ENSMUST00000109331 Plxnb2-001 protein_coding Mus_musculus 0 254
ENSMUST00000015511 Plxnd1-001 protein_coding Mus_musculus 0 200

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