C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 82
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296490 WDR82-001 ENSG00000164091 9606 - 3:52254421-52278643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296490 30.993±0.00 33.318±0.00 3.044±0.00 21.010±13.75 14.578±6.39 16.153±8.03 11.082±6.93 13.135±9.62 9.082±0.26 14.877±9.54 15.866±10.96 24.262±13.68 26.233±3.28 26.594±13.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003682 IEA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0035097 IDA histone methyltransferase complex
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0048188 IDA Set1C/COMPASS complex
GO:0051568 IDA histone H3-K4 methylation
GO:0072357 IDA PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020490 Wdr82-001 protein_coding Mus_musculus 0 2159
ENSMUST00000190564 Wdr82-002 nonsense_mediated_decay Mus_musculus 0 601
ENSMUST00000191147 Wdr82-003 retained_intron Mus_musculus 0 348

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