C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296674 RPS23-001 ENSG00000186468 9606 - 5:82273358-82278577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000296674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000296674 11.212±0.00 16.413±0.00 6.580±0.00 21.047±1.15 7.746±0.00 19.459±9.05 7.945±1.38 12.882±6.29 20.637±0.00 9.495±0.00 7.628±0.00 9.768±0.00 9.110±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857
CIL_000922 CIL_000922_0001 VISTA 5:81723063-82325864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051955 Rps23-201 protein_coding Mus_musculus 0 630
ENSMUST00000146939 Rps23-ps2-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000098864 Gm10689-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000118718 Gm15464-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000116115 Rps23-ps-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000165677 Gm8624-002 processed_transcript Mus_musculus 0 540
ENSMUST00000099128 Gm5148-003 protein_coding Mus_musculus 0 529
ENSMUST00000108105 Gm5148-002 protein_coding Mus_musculus 0 529
ENSMUST00000079755 Gm5148-001 protein_coding Mus_musculus 0 529
ENSMUST00000118083 Gm8624-001 transcribed_processed_pseudogene Mus_musculus 0 521
ENSMUST00000086479 C330021F23Rik-201 protein_coding Mus_musculus 0 516
ENSMUST00000151633 C330021F23Rik-002 protein_coding Mus_musculus 0 516
ENSMUST00000136592 C330021F23Rik-001 protein_coding Mus_musculus 0 516
ENSMUST00000168454 Gm9372-201 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119177 Gm11822-001 processed_pseudogene Mus_musculus 0 255

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