C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-cell leukemia homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296921 TLX3-001 ENSG00000164438 9606 + 5:171309284-171312134 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartOvaryPlacentaTestisENST00000296921
Transcript ID Adipose Heart Ovary Placenta Testis
ENST00000296921 0.031±0.00 0.067±0.00 0.134±0.00 0.072±0.00 0.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417
CIL_00097F CIL_00097F_0001 VISTA 5:170900986-171503014
CIL_0007NP CIL_0007NP_0001 UCNEbase 5:170990945-171323112
CIL_00092S CIL_00092S_0001 VISTA 5:171022159-171623481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001708 IEA cell fate specification
GO:0001764 IEA neuron migration
GO:0002087 IEA regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007417 IEA central nervous system development
GO:0007585 IEA respiratory gaseous exchange
GO:0030182 IEA neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IEA negative regulation of neuron differentiation
GO:0048665 IEA neuron fate specification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037746 Tlx3-001 protein_coding Mus_musculus 0 2084
ENSMUST00000089641 Tlx2-001 protein_coding Mus_musculus 0 326
ENSMUST00000174674 Tlx2-002 protein_coding Mus_musculus 0 233

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