C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PCF11 cleavage and polyadenylation factor subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298281 PCF11-001 ENSG00000165494 9606 + 11:83156988-83187451 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000298281
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000298281 6.547±0.00 4.954±0.00 9.073±0.00 5.214±0.28 2.721±0.00 5.574±1.00 2.454±0.21 2.506±0.56 0.656±0.04 3.577±1.22 1.992±0.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005654 TAS nucleoplasm
GO:0005849 NAS mRNA cleavage factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006379 NAS mRNA cleavage
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119954 Pcf11-001 protein_coding Mus_musculus 0 7275
ENSMUST00000151177 Pcf11-002 protein_coding Mus_musculus 0 3954
ENSMUST00000148539 Pcf11-003 retained_intron Mus_musculus 0 479
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.000003 60

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