C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298316 ARF6-001 ENSG00000165527 9606 + 14:49893092-49897054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298316 24.674±0.00 27.333±0.00 5.514±0.00 9.555±0.00 14.195±4.01 15.034±0.59 4.986±2.75 12.435±7.92 10.769±0.00 11.223±0.00 6.865±4.76 16.271±10.19 23.696±13.58 18.296±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0001889 IEA liver development
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005525 TAS:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005768 TAS endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0005938 IDA cell cortex
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006928 TAS cellular component movement
GO:0007049 IEA cell cycle
GO:0007155 TAS cell adhesion
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0019001 IEA guanyl nucleotide binding
GO:0030139 IDA endocytic vesicle
GO:0030838 IMP positive regulation of actin filament polymerization
GO:0030866 IMP cortical actin cytoskeleton organization
GO:0031527 IDA filopodium membrane
GO:0031529 IDA ruffle organization
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0031996 IPI thioesterase binding
GO:0033028 IEA myeloid cell apoptotic process
GO:0034394 ISS protein localization to cell surface
GO:0035020 IDA regulation of Rac protein signal transduction
GO:0036010 IMP protein localization to endosome
GO:0048261 TAS negative regulation of receptor-mediated endocytosis
GO:0051301 IEA cell division
GO:0051489 IDA regulation of filopodium assembly
GO:0055037 IEA recycling endosome
GO:0055038 IDA recycling endosome membrane
GO:0060998 ISS regulation of dendritic spine development
GO:0070062 IDA extracellular vesicular exosome
GO:0090004 ISS positive regulation of establishment of protein localization to plasma membrane
GO:0090162 IEA establishment of epithelial cell polarity
GO:0097284 IEA hepatocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050063 Arf6-201 protein_coding Mus_musculus 0 1772
ENSMUST00000163300 Arf1-201 protein_coding Mus_musculus 0 193
ENSMUST00000061242 Arf1-001 protein_coding Mus_musculus 0 193
ENSMUST00000191395 RP24-316C22.1-001 processed_pseudogene Mus_musculus 3e-28 132
ENSMUST00000053451 Gm9887-201 protein_coding Mus_musculus 1e-21 110

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