C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PTPRF interacting protein, binding protein 2 (liprin beta 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299492 PPFIBP2-001 ENSG00000166387 9606 + 11:7513770-7653756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299492
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299492 1.553±0.00 2.401±0.00 0.761±0.00 2.604±2.02 2.130±0.26 0.157±0.00 3.401±0.00 3.658±0.00 1.474±0.30 1.315±0.00 2.009±0.00 1.600±0.00 7.045±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D4 CIL_0000D4_0002 CGP 11:7485388-7657127
CIL_0000DI CIL_0000DI_0002 CGP 11:7513298-7677222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005622 TAS intracellular
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0008907 IEA integrase activity
GO:0015074 IEA DNA integration
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040056 Ppfibp2-201 protein_coding Mus_musculus 0 3109
ENSMUST00000098134 Ppfibp2-202 protein_coding Mus_musculus 0 2950

Loading