C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: component of oligomeric golgi complex 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299886 COG1-001 ENSG00000166685 9606 + 17:73192990-73208507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299886 10.265±0.00 12.528±0.00 1.685±0.00 10.290±4.32 11.246±0.00 5.077±1.51 5.356±3.95 11.052±0.00 3.806±0.97 5.012±2.39 9.310±0.00 7.972±3.70 10.229±3.37 22.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0001 VISTA 17:72990906-73592358
CIL_000678 CIL_000678_0001 CGP 17:73165012-73208507
CIL_000679 CIL_000679_0001 CGP 17:73192632-73236753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0006891 NAS intra-Golgi vesicle-mediated transport
GO:0007030 NAS Golgi organization
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0017119 NAS Golgi transport complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018805 Cog1-001 protein_coding Mus_musculus 0 2902
ENSMUST00000063776 Cog1-002 protein_coding Mus_musculus 0 874
ENSMUST00000148736 Cog1-008 protein_coding Mus_musculus 0 586
ENSMUST00000123085 Cog1-007 retained_intron Mus_musculus 0 573

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