C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299957 CASC4-001 ENSG00000166734 9606 + 15:44288731-44415758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299957
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299957 13.269±0.00 7.042±0.00 16.013±2.25 6.200±0.96 10.476±3.22 4.643±0.28 11.064±1.22 8.764±0.97 13.737±1.48 5.290±2.80 11.408±1.76 3.681±1.29 9.817±4.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758
CIL_0004QJ CIL_0004QJ_0002 CGP 15:44288729-44529038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078752 Casc4-001 protein_coding Mus_musculus 0 2063
ENSMUST00000126256 Casc4-004 processed_transcript Mus_musculus 0 1375
ENSMUST00000110586 Casc4-201 protein_coding Mus_musculus 0 1339
ENSMUST00000089915 Casc4-003 protein_coding Mus_musculus 0 1059
ENSMUST00000089912 Casc4-002 protein_coding Mus_musculus 0 1059
ENSMUST00000135416 Casc4-006 retained_intron Mus_musculus 0 957
ENSMUST00000136023 Casc4-007 protein_coding Mus_musculus 0 841
ENSMUST00000127475 Casc4-005 retained_intron Mus_musculus 0 573

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