C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pygopus family PHD finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302000 PYGO1-001 ENSG00000171016 9606 - 15:55538890-55588947 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302000
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302000 0.239±0.00 0.351±0.00 0.179±0.00 0.491±0.00 0.025±0.00 0.047±0.00 0.201±0.00 2.061±0.00 0.916±0.82 0.094±0.00 0.241±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0007286 IEA spermatid development
GO:0007289 IEA spermatid nucleus differentiation
GO:0008270 IEA zinc ion binding
GO:0009791 IEA post-embryonic development
GO:0016055 IEA Wnt signaling pathway
GO:0034504 IEA protein localization to nucleus
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038489 Pygo1-001 protein_coding Mus_musculus 0 399
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000003 60
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.0002 55

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