C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FBJ murine osteosarcoma viral oncogene homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303562 FOS-001 ENSG00000170345 9606 + 14:75278774-75282230 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303562
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303562 98.284±0.00 63.507±0.00 11.667±0.00 16.434±8.74 209.988±161.85 32.937±18.42 1.707±0.38 10.058±9.02 15.120±6.80 36.069±8.58 21.492±9.39 187.268±243.76 178.952±14.70 17.505±12.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084S CIL_00084S_0001 VISTA 14:74936670-75538350
CIL_00085H CIL_00085H_0001 VISTA 14:74957721-75560295
CIL_0007PT CIL_0007PT_0001 VISTA 14:74957738-75560035
CIL_0004K7 CIL_0004K7_0002 CGP 14:75131470-75282230
CIL_0002AD CIL_0002AD_0001 CGP 14:75278774-75474111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001661 IEA conditioned taste aversion
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005783 IEA endoplasmic reticulum
GO:0006306 TAS DNA methylation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006954 TAS inflammatory response
GO:0007179 IDA transforming growth factor beta receptor signaling pathway
GO:0007399 IEA nervous system development
GO:0007565 IEA female pregnancy
GO:0007568 IEA aging
GO:0008134 IEA transcription factor binding
GO:0009409 IEA response to cold
GO:0009416 IEA response to light stimulus
GO:0009612 IEA response to mechanical stimulus
GO:0009629 IEA response to gravity
GO:0009636 IEA response to toxic substance
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IEA membrane
GO:0030431 IEA sleep
GO:0031668 IEA cellular response to extracellular stimulus
GO:0032496 IEA response to lipopolysaccharide
GO:0032570 IEA response to progesterone
GO:0032870 IEA cellular response to hormone stimulus
GO:0034097 IEA response to cytokine
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0034614 IDA cellular response to reactive oxygen species
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0035902 IEA response to immobilization stress
GO:0035914 IEA skeletal muscle cell differentiation
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0042493 IEA response to drug
GO:0043005 IEA neuron projection
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045087 TAS innate immune response
GO:0045672 IEA positive regulation of osteoclast differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051090 TAS regulation of sequence-specific DNA binding transcription factor activity
GO:0051403 TAS stress-activated MAPK cascade
GO:0051412 IEA response to corticosterone
GO:0051591 IEA response to cAMP
GO:0060395 IDA SMAD protein signal transduction
GO:0070412 IPI R-SMAD binding
GO:0071277 IEA cellular response to calcium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021674 Fos-001 protein_coding Mus_musculus 0 1716
ENSMUST00000140525 Fos-003 processed_transcript Mus_musculus 0 841
ENSMUST00000134311 Fos-002 processed_transcript Mus_musculus 0 717
ENSMUST00000136122 Fos-004 processed_transcript Mus_musculus 0 640

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