C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium inwardly-rectifying channel, subfamily J, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303592 KCNJ4-001 ENSG00000168135 9606 - 22:38426327-38455199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverOvaryPlacentaTestisENST00000303592
Transcript ID Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000303592 15.242±11.91 0.063±0.00 7.089±6.77 0.041±0.00 0.070±0.00 0.399±0.44 0.044±0.00 0.538±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MM CIL_0008MM_0001 VISTA 22:37872841-38473542
CIL_0005DH CIL_0005DH_0001 CGP 22:38290691-38455199
CIL_0005DI CIL_0005DI_0001 CGP 22:38426327-38483447

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005242 IEA inward rectifier potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0006813 TAS:IEA potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 TAS voltage-gated potassium channel complex
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030054 IEA cell junction
GO:0030165 IPI PDZ domain binding
GO:0031410 IEA cytoplasmic vesicle
GO:0034765 IEA regulation of ion transmembrane transport
GO:0045211 IEA postsynaptic membrane
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057801 Kcnj4-201 protein_coding Mus_musculus 0 2091
ENSMUST00000108717 Kcnj12-201 protein_coding Mus_musculus 0 592
ENSMUST00000041944 Kcnj12-002 protein_coding Mus_musculus 0 592
ENSMUST00000089184 Kcnj12-001 protein_coding Mus_musculus 0 592
ENSDART00000022533 kcnj2a-201 protein_coding Danio_rerio 0 294

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