C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305798 TSPAN5-001 ENSG00000168785 9606 - 4:98470367-98658629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000305798
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000305798 3.138±0.00 15.092±4.75 0.546±0.00 0.900±0.43 0.293±0.00 0.975±0.61 0.632±0.00 1.404±1.11 8.047±7.31 2.730±1.23 5.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C0 CIL_0005C0_0002 CGP 4:98261384-98658629
CIL_0008LO CIL_0008LO_0001 VISTA 4:98355609-98958137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0045747 IMP positive regulation of Notch signaling pathway
GO:0051604 IMP protein maturation
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029800 Tspan5-001 protein_coding Mus_musculus 0 1332
ENSMUST00000121826 Tspan5-004 protein_coding Mus_musculus 0 1077
ENSMUST00000119993 Tspan5-003 protein_coding Mus_musculus 0 1077
ENSMUST00000142890 Tspan5-002 nonsense_mediated_decay Mus_musculus 0 756
ENSMUST00000146356 Tspan5-009 protein_coding Mus_musculus 0 649
ENSMUST00000127772 Tspan5-008 nonsense_mediated_decay Mus_musculus 0 636
ENSMUST00000135629 Tspan5-006 protein_coding Mus_musculus 0 501
ENSMUST00000142001 Tspan5-007 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000153336 Tspan5-005 protein_coding Mus_musculus 0 455

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